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Our Services

Our Products 

ProteoLens

Protein data analysis software:

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  • Universal data import — works with Skyline, MaxQuant, Spectronaut, DIA-NN, OpenMS, OpenSWATH, Proteome Discoverer, Progenesis, SpectroMine, or pre-formatted data

  • Quality control — normalization, missing-data and CV metrics, PCA plots, per-protein profile plots

  • Differential expression analysis — powered by MSstats, with configurable significance thresholds and volcano plots

  • Pathway enrichment analysis — ORA and GSEA against KEGG, Reactome, and GO, with readable pathway and gene names

  • Interactive visualizations — violin and box plots for any protein of interest

  • Downloadable results — every plot and table exportable as SVG/CSV

PathoNova

Pathway analysis software:

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  • Pathway Analysis (ORA) — Fisher's exact test with FDR correction against MSigDB Hallmark, Reactome, and GO

  • GSEA — Pre-ranked gene set enrichment with leading-edge gene heatmaps

  • Single-Sample GSEA — Per-sample pathway activity scoring (ssGSEA, GSVA, z-score, PLAGE)

  • Custom Gene Lists — Upload your own .gmt files or gene lists

  • Network Analysis — STRING-based interaction networks with hub gene identification

  • Multi-Atlas Integration — 14 specialized libraries (Azimuth, BioCarta, ENCODE, GeneSigDB, JASPAR, KEGG, LINCS, WikiPathways, and more)

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